---
title: "NAP Dashboard"
output:
flexdashboard::flex_dashboard:
orientation: rows
vertical_layout: fill
source_code: embed
---
```{r setup, include=FALSE,echo=FALSE}
library(flexdashboard)
```
```{r global, include=FALSE}
library(readxl)
library(magrittr)
country_codes_un <- read_excel("Open_NAPs_Database.xlsx",sheet = "country_codes_un")
nap_outputs <- read_excel("Open_NAPs_Database.xlsx",sheet = "nap_output_docs")
Readiness<- read_excel("Open_NAPs_Database.xlsx",sheet = "Readiness")
GEF <- read_excel("Open_NAPs_Database.xlsx",sheet = "GEF")%>%na.omit()
GCF <- read_excel("Open_NAPs_Database.xlsx",sheet = "GCF")%>%na.omit(GCF)
NAPS <- read_excel("Open_NAPs_Database.xlsx",sheet = "Submitted_NAPs")
latlong <- read_excel("Open_NAPs_Database.xlsx",sheet = "countrylatlong")
NAPATbl <- read_excel("Open_NAPs_Database.xlsx",sheet = "project_database")
policy_db<-read_excel("Open_NAPs_Database.xlsx",sheet = "Policy_db")
```
```{r, include=FALSE}
library(magrittr)
napcountry_outputs<-merge(country_codes_un,nap_outputs, by="country-code")
GEF_Projects<-merge(country_codes_un,GEF, by="countryname", all.y = TRUE)
GCF_Projects<-merge(country_codes_un,GCF, by="countryname", all.y = TRUE)
Country_Readiness<-merge(country_codes_un,Readiness, by="countryname", all.y = TRUE)
NAPCountries<-merge(country_codes_un,NAPS, by="countryname", all.y = TRUE)
xycountrycode<-merge(country_codes_un,latlong, by='countryname', all.x = TRUE)
NAP_Countries<-merge(NAPS,xycountrycode, by="countryname", all.x = TRUE)
NAPA<-merge(NAPATbl,xycountrycode, by="countryname", all.x = TRUE)
policy<-merge(policy_db,country_codes_un, by="country-code", all.y=TRUE)
```
```{r,include=FALSE}
library(dplyr)
library(magrittr)
GCF_Core <- as.data.frame(GCF_Projects)%>% group_by(`countryname`)%>%
summarise("Total GCF Funding"=sum(`Total GCF Funding`))#%>%
#tidyr::pivot_wider(names_from = "countryname", values_from ="Total GCF Funding")
GCF_Co_Finance <- as.data.frame(GCF_Projects)%>% group_by(`countryname`)%>%
summarise("Total Co-Financing"=sum(`Total Co-Financing`))
GEF_Grant <- as.data.frame(GEF_Projects)%>% group_by(`countryname`)%>%
summarise("Grant"=sum(`Grant`))
GEF_Co_Finance <- as.data.frame(GEF_Projects)%>% group_by(`countryname`)%>%
summarise("Total Co-Financing"=sum(`Co-Financing`))
Readiness_df <- as.data.frame(Country_Readiness)%>% group_by(`countryname`,Region,`Grant Agreement Type`)%>% summarise("Amount Approved"=sum(`Amount Approved`),"Amount Disbursed"=sum(`Amount Disbursed`) )
NAPA_df <- as.data.frame(NAPA)%>% group_by(`countryname`,Region,Fund,status)%>% summarise("Amount Approved"=sum(Amount) )
NAPA_New<-NAPA_df[-90,]
```
Funding Overview
=======================================================================
Column { data-width=50 }
-----------------------------------------------------------------------
### GCF {.value-box}
-----------------------------------------------------------------------
```{r}
gcf_total<-sum(GCF_Core$`Total GCF Funding`)
valueBox(value = prettyNum(format(gcf_total,big.mark = ","), "", sep = ","),
caption = "Total GCF Funding",
icon = "logo-usd",
color = "brown")
```
### GEF {.value-box}
```{r}
gef_total<-sum(GEF_Grant$Grant)
valueBox(value = prettyNum(format(gef_total,big.mark = ","), "", sep = ","),
caption = "Total GEF Funding",
icon = "logo-usd",
color = "orange")
```
### NAPs {.value-box}
```{r}
naps_total<-count(NAPS)
valueBox(naps_total,
caption = "NAPs Submitted",
icon = "document-text-outline",
color = "green")
```
Column { data-width=50 }
-----------------------------------------------------------------------
```{r}
library(ggplot2)
library(treemapify)
ggplot(data = GCF_Core, aes(fill=countryname, area=`Total GCF Funding`, label = paste(countryname,"\n",prettyNum(`Total GCF Funding`, big.mark = ","))))+
geom_treemap()+
geom_treemap_text(colour='black', place='centre')+
labs(subtitle = 'GCF Projects Funding by Country')+
theme(legend.position = 'none')
```
-----------------------------------------------------------------------
```{r}
library(ggplot2)
library(treemapify)
ggplot(data = subset(GEF_Grant,`Grant`>50000000), aes(fill=countryname, area=Grant, label = paste(countryname,"\n",prettyNum(Grant, big.mark = ","))))+
geom_treemap()+
geom_treemap_text(colour='black', place='centre')+
labs(subtitle = 'GEF Project Grants by Country')+
theme(legend.position = 'none')
```
Column { data-width=50 }
-----------------------------------------------------------------------
```{r echo=FALSE}
library(ggplot2)
library(ggplotlyExtra)
library(treemapify)
ggplot(data = NAPA_df, aes(fill=countryname, area=NAPA_df$`Amount Approved`, label = paste(countryname,"\n",prettyNum(`Amount Approved`, big.mark = ","))))+
geom_treemap()+
geom_treemap_text(colour='black', place='centre')+
labs(subtitle = 'NAPA Funding by Country')+
theme(legend.position = 'none')
#ggplotly(x)
```
Readiness
========================================================================
### Projects by Region
```{r echo=FALSE, message=FALSE, warning=FALSE}
library(plotly)
library(dplyr)
library(base)
Country_Readiness %>% count(Country_Readiness$`Project Title`)%>%na.omit(Country_Readiness)%>%
plot_ly(type = "bar",
y = Country_Readiness$`Project Title`,
x = Country_Readiness$Region)
```
### Amount Approved by Country
```{r,echo=FALSE}
library(plotly)
Readiness_df%>%arrange()%>%
plot_ly(type = "bar",
x = Readiness_df$`Amount Approved`,
y = Readiness_df$countryname
)
```
Outputs
========================================================================
{.tabset .tabset-fade}
-------------------------------------
### NAP Outputs
```{r, echo=FALSE, warning=FALSE,message=FALSE}
library(DT)
library(rio)
y<-napcountry_outputs[,c(2,5,7,12,11)]
datatable(y,filter = 'top',fillContainer = T,rownames = F, editable = F, style = 'jqueryui', class = 'display responsive', width = '100%', caption = "NAP Output Documents", extensions = 'Buttons', options=list(initComplete = JS("function(settings, json) {$(this.api().table().header()).css({'font-size' : '70%'});}"),pageLength= 10, dom='lfrtipB', buttons = c('copy', 'csv', 'excel', 'pdf')))%>%
DT::formatStyle(columns = colnames(y),fontSize= '12px')
```
### Policies
```{r, echo=FALSE, warning=FALSE,message=FALSE}
library(DT)
library(rio)
p<-policy[,c(3,4,6,7)]
datatable(p,filter = 'top',fillContainer = T,rownames = F, editable = F, style = 'jqueryui', class = 'cell-border stripe', width = '100%', caption = "Policy Doduments", extensions = 'Buttons', options=list(initComplete = JS("function(settings, json) {$(this.api().table().header()).css({'font-size' : '70%'});}"),pageLength= 10, dom='lfrtipB', buttons = c('copy', 'csv', 'excel', 'pdf')))%>%
DT::formatStyle(columns = colnames(p),fontSize= '12px')
```
Maps
========================================================================
{.tabset .tabset-fade}
-------------------------------------
### Countries with Submitted NAPs
```{r,echo=FALSE}
library(leaflet)
library(dplyr)
library(ggplot2)
library(tidyverse)
NAP_Countries<-NAP_Countries%>%
mutate(popup_info=paste(countryname,"
","Submitted on:",NAP_Countries$`Date of submission`,"
","Title:",NAP_Countries$`Document title`))
leaflet(NAP_Countries)%>%
addTiles()%>%
addCircleMarkers(data=NAP_Countries, fill=T,lng=~lon, lat =~lat, radius = ~4,popup =~popup_info)
```
### Land Cover
```{r,echo=FALSE, message=FALSE, warning=FALSE}
library(rgee)
library(raster)
library(st)
library(sf)
ee_Initialize()
admin0<-ee$FeatureCollection("FAO/GAUL/2015/level2")
malawi<- admin0$filter(ee$Filter$eq('ADM0_NAME', 'Malawi'))
createTimeBand <-function(img) {
year <- ee$Date(img$get('system:time_start'))$get('year')$subtract(2001)
ee$Image(year)$byte()$addBands(img)}
faolc <- ee$ImageCollection("MODIS/006/MCD12Q1")$select('LC_Prop1')$filterBounds(malawi$geometry())$ map(createTimeBand)
lc_reduce <- faolc$reduce(ee$Reducer$linearFit())
lc_reduce <- lc_reduce$addBands(
lc_reduce$select('offset'))
malawi_lc<-lc_reduce$clip(malawi)
Map$setCenter(33.820231,-13.514770, 6)
Map$addLayer(
eeObject = malawi_lc,
visParams = list(
bands = c("scale", "offset", "scale"),
min = 0,
max = c(0.18,20,0.18)),
name = "Malawi Landcover", legend = TRUE)+
Map$addLayer(malawi,{},'Malawi Districts',opacity = 0.3, TRUE)
```
Climate {data-orientation=columns}
========================================================================
{.tabset .tabset-fade}
-------------------------------------
Climate data trends for Africa. Data set: [Terraclimate](https://developers.google.com/earth-engine/datasets/catalog/IDAHO_EPSCOR_TERRACLIMATE)
```{r, include=FALSE,echo=FALSE}
library(rgee)
library(raster)
ee_Initialize()
Tmax<-ee$ImageCollection("IDAHO_EPSCOR/TERRACLIMATE")$
select('tmmx')
library(sf)
Africa_Trace<-read_sf("C:/Workspace/RMardown_NAPS/Open-NAPs-Data/opennaps/Africa_Trace.shp")
#need to reconfigure this path to your workspace
TmaxAfrica<-ee_extract(x=Tmax, y=Africa_Trace, fun=ee$Reducer$mean())
library(tidyverse)
Tmaxlong<-pivot_longer(TmaxAfrica,everything(),names_to = 'month',values_to = 'tmax')
Date<-seq(as.Date('1958-01-01'), by="month", length.out=757)
Tmaxlong$Date<-Date
library(lubridate)
tmax_ann<-Tmaxlong%>%mutate(year=year(Date), month=month(Date))%>%
group_by(year)%>% summarise(tmax=sum(tmax))
library(xts)
tmax_ts<-xts(Tmaxlong$tmax,Tmaxlong$Date)
```
### Temperature - Monthly
```{r}
library(dygraphs)
dygraph(tmax_ts, main = "Monthly Temperature Time Series") %>%
dyRangeSelector(dateWindow = c("1958-01-01", "2020-12-01"))
```
### Temperature - Annual
```{r}
library(dygraphs)
dygraph(tmax_ann, main = "Annual Temperature Time Series") %>%
dyRangeSelector(dateWindow = c("1958-01-01", "2020-12-01"))
```
-------------------------------------
```{r echo=FALSE, include=FALSE}
library(rgee)
library(raster)
ee_Initialize()
pr<-ee$ImageCollection("IDAHO_EPSCOR/TERRACLIMATE")$select('pr')
library(sf)
Africa_Trace<-read_sf("C:/Workspace/RMardown_NAPS/Open-NAPs-Data/opennaps/Africa_Trace.shp")
prAfrica<-ee_extract(x=pr, y=Africa_Trace, fun=ee$Reducer$mean())
library(tidyverse)
prlong<-pivot_longer(prAfrica,everything(),names_to = 'month',values_to = 'pr')
Date<-seq(as.Date('1958-01-01'), by="month", length.out=757)
prlong$Date<-Date
library(lubridate)
pr_ann<-prlong%>%mutate(year=year(Date), month=month(Date))%>%
group_by(year)%>%
summarise(pr=sum(pr))
library(xts)
pr_ts<-xts(prlong$pr,prlong$Date)
```
### Precipitation - Monthly
```{r}
library(dygraphs)
dygraph(pr_ts, main = "Monthly Time Series") %>%
dyRangeSelector(dateWindow = c("1958-01-01", "2020-12-01"))
```
### Precipitation - Annual
```{r}
library(dygraphs)
dygraph(pr_ann, main = "Annual Time Series") %>%
dyRangeSelector(dateWindow = c("1958-01-01", "2020-12-01"))
```
{.tabset }
--------------------------------------------------------------
Global Emission Trends. Data set: [WorldBank](https://data.worldbank.org/indicator)
### Co2 Emissions
```{r}
library(dplyr)
library(ggplot2)
library(wbstats)
ind<-wb_indicators()
co2<-wb_data("EN.ATM.CO2E.KT",return_wide = FALSE)
wbplot<- ggplot2::ggplot(co2,aes(x=date, y=value, color=country))+
ggtitle('Co2 Emissions')+
xlab('Time')+ylab('value (kt)')+
geom_line()+
theme(legend.position = "none")
plotly::ggplotly(wbplot)
```
### GHG Emissions
```{r}
library(dplyr)
library(ggplot2)
GHG<-wb_data("EN.ATM.GHGT.KT.CE",return_wide = FALSE,start_date = 1970,end_date = 2012)
wbplot<- ggplot2::ggplot(GHG,aes(x=date, y=value, color=country))+
ggtitle('GHG Emissions- kt of CO2 equivalent')+
xlab('Time')+ylab('value')+
geom_line()+
theme(legend.position="none")
plotly::ggplotly(wbplot)
```
### Emmissions per ppp$GDP
```{r}
library(dplyr)
library(ggplot2)
co2pppgdp<-wb_data("EN.ATM.CO2E.PP.GD",return_wide = FALSE,start_date = 1990,end_date = 2016)
wbplot<- ggplot2::ggplot(co2pppgdp,aes(x=date, y=value, color=country))+
ggtitle('CO2 emissions (kg per PPP $ of GDP)')+
xlab('Time')+ylab('value (kg)')+
geom_line()+
theme(legend.position = "none")
plotly::ggplotly(wbplot)
```
### Emmissions (metric tons per capita)
```{r}
library(dplyr)
library(ggplot2)
co2mtcapita<-wb_data("EN.ATM.CO2E.PC",return_wide = FALSE,start_date = 1960,end_date = 2016)
wbplot<- ggplot2::ggplot(co2mtcapita,aes(x=date, y=value, color=country))+
ggtitle('CO2 emissions (metric tons per capita)')+
xlab('Time')+ylab('value (metric tons)')+
geom_line()+
theme(legend.position = "none")
plotly::ggplotly(wbplot)
```
Agriculture {data-orientation=rows}
========================================================================
Agricultural Productivity for selected crops.
Data source: [FAOSTAT](http://www.fao.org/faostat/en/#data)
```{r, echo=FALSE}
library(FAOSTAT)
data_folder <- "FAOSTATs"
dir.create(data_folder)
production_crops <- get_faostat_bulk(code = "QC", data_folder = data_folder)
#saveRDS(production_crops, "FAOSTATs/production_crops_e_all_data.rds")
#production_crops <- readRDS("FAOSTATs/production_crops_e_all_data.rds")
```
Row
--------------------------------------------------------------------------
### Crop Yield
```{r, echo=FALSE}
library(dplyr)
library(xts)
library(magrittr)
library(timeSeries)
library(dygraphs)
selectcrops<-production_crops%>% na.omit()%>%group_by(item,element,year)%>%
summarise(value=sum(value))%>%
dplyr::filter(element=="Yield")%>%dplyr::filter(item=="Maize" | item=="Yams" |item=="Apples"|item=="Avocados"|item=="Bananas"|item=="Barley"|item=="Beans,green"|item=="Beans,dry"|item=="Cassava"|item=="Cereals,Total"|item=="Dates"|item=="Onions, dry"|item=="Lentils"|item=="Millet"|item=="Oats"|item=="Olives"|item=="Oil palm fruit"|item=="Potoatoes"|item=="Pulses,Total"|item=="Rice,paddy"|item=="Sorghum"|item=="Soybeans"|item=="Tea"|item=="Tomatoes"|item=="Vegetables Primary"|item=="Wheat")
library(ggplot2)
xcrop<- ggplot2::ggplot(selectcrops,aes(x=year, y=value, color=item))+
ggtitle('Global Crop Yield - Annual Trends')+
xlab('Time')+ylab('Yield (hg/ha)')+
geom_line()+
theme_minimal()
plotly::ggplotly(xcrop)
```
### Total Crop Production
```{r}
library(dplyr)
library(xts)
library(magrittr)
library(timeSeries)
library(dygraphs)
production<-production_crops%>% na.omit()%>%group_by(item,element,year)%>%
summarise(value=sum(value))%>%
dplyr::filter(element=="Production")%>%dplyr::filter(item=="Maize" | item=="Yams" |item=="Apples"|item=="Avocados"|item=="Bananas"|item=="Barley"|item=="Beans,green"|item=="Beans,dry"|item=="Cassava"|item=="Cereals,Total"|item=="Dates"|item=="Onions, dry"|item=="Lentils"|item=="Millet"|item=="Oats"|item=="Olives"|item=="Oil palm fruit"|item=="Potoatoes"|item=="Pulses,Total"|item=="Rice,paddy"|item=="Sorghum"|item=="Soybeans"|item=="Tea"|item=="Tomatoes"|item=="Vegetables Primary"|item=="Wheat")
library(ggplot2)
xprod<- ggplot2::ggplot(production,aes(x=year, y=value, color=item))+
ggtitle('Global Crop Production - Annual Trends')+
xlab('Time')+ylab('Tonnes')+
geom_line()+
theme_minimal()
plotly::ggplotly(xprod)
```
Row
-----------------------------------------------------------------
### Area harvested
```{r}
library(dplyr)
library(xts)
library(magrittr)
library(timeSeries)
library(dygraphs)
Area_harvested<-production_crops%>%na.omit()%>% group_by(item,element,year)%>%
summarise(value=sum(value))%>%
dplyr::filter(element=="Area harvested")%>%dplyr::filter(item=="Maize" | item=="Yams" |item=="Apples"|item=="Avocados"|item=="Bananas"|item=="Barley"|item=="Beans,green"|item=="Beans,dry"|item=="Cassava"|item=="Cereals,Total"|item=="Dates"|item=="Onions, dry"|item=="Lentils"|item=="Millet"|item=="Oats"|item=="Olives"|item=="Oil palm fruit"|item=="Potoatoes"|item=="Pulses,Total"|item=="Rice,paddy"|item=="Sorghum"|item=="Soybeans"|item=="Tea"|item=="Tomatoes"|item=="Vegetables Primary"|item=="Wheat")
library(ggplot2)
area<- ggplot2::ggplot(Area_harvested,aes(x=year, y=value, color=item))+
ggtitle('Annual Global Crop Trends - Area Harvested')+
xlab('Time')+ylab('Area harvested (ha)')+
geom_line()+
theme_minimal()
plotly::ggplotly(area)
```
### Maize Crop Production
```{r, echo=FALSE}
library(dplyr)
library(xts)
library(magrittr)
library(timeSeries)
library(dygraphs)
Maize<-production_crops%>% na.omit()%>%group_by(item,element,year)%>%
summarise(value=sum(value))%>%
dplyr::filter(item=="Maize")
library(ggplot2)
Maizecrop<- ggplot2::ggplot(Maize,aes(x=year, y=value, color=element))+
ggtitle('Global Maize Production Trends')+
xlab('Time')+ylab('value')+
geom_line()+
theme_minimal()
plotly::ggplotly(Maizecrop)
```
About
========================================================================
_The Open NAPs Dashboard_
Open NAPs are National Adaptation Plans for developing countries being developed through an open collaboration involving a wide range of actors, designed to support countries develop the best possible adaptation plans along the guidelines established by the UNFCCC Conference of Parties, and further elaborated through technical guidelines led by the LDC Expert Group (LEG), with continuing extension through supplements developed by a wide range of organizations.
The Open NAP initiative is moderated by the LEG under the UNFCCC. For more information about the work of the LEG, visit [here](https://unfccc.int/LEG)
For more information about the National Adaptation Plans, [browse here](https://napcentral.netlify.app/open-naps/)
For any questions or feedback, [write to us](opennaps@naps.org)
